PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.60UY0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 114aa    MW: 12984.9 Da    PI: 10.323
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.60UY0genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-105797954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  r RR+ri ++f  L++++P        K++ +++Le+A++Y+k L
  Araip.60UY0 57 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEEAIHYVKFL 97
                 699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1544897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1453108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1254101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1254103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-1154101No hitNo description
PfamPF000109.1E-85797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MDCIDPSGNT ITCASIEEQG SSSNPNNKRK KGNAMNNNKR KNKGVMKLST DPQSVAARER  60
RHRISDRFKI LQSMVPGGSK MDTVSMLEEA IHYVKFLKAQ IWLHQTLMMN YDHF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-49AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186615.13e-80PREDICTED: transcription factor bHLH140-like
SwissprotQ7XAQ64e-34LAX_ORYSJ; Transcription factor LAX PANICLE
SwissprotQ9M0414e-33BH140_ARATH; Transcription factor bHLH140
TrEMBLW9R2D31e-43W9R2D3_9R
STRINGSolyc09g005070.1.12e-38(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-34APRATAXIN-like